Segmentation fault with core dump

Started by Joshua Berryalmost 13 years ago22 messagesgeneral
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#1Joshua Berry
yoberi@gmail.com

Hi Group,

I'm using PG 9.1.9 with a client application using various versions of the
pgsqlODBC driver on Windows. Cursors are used heavily, as well as some
pretty heavy trigger queries on db writes which update several materialized
views.

The server has 48GB RAM installed, PG is configured for 12GB shared
buffers, 8MB max_stack_depth, 32MB temp_buffers, and 2MB work_mem. Most of
the other settings are defaults.

The server will seg fault from every few days to up to two weeks. Each time
one of the postgres server processes seg faults, the server gets terminated
by signal 11, restarts in recovery for up to 30 seconds, after which time
it accepts connections as if nothing ever happened. Unfortunately all the
open cursors and connections are lost, so the client apps are left in a bad
state.

Seg faults have also occurred with PG 8.4. However that server's DELL OMSA
(hardware health monitoring system) began to report RAM parity errors, so I
figured that the seg faults were due to hardware issues and I did not
configure the system to save core files in order to debug. I migrated the
database to a server running PG9.1 with the hopes that the problem would
disappear, but it has not. So now I'm starting to debug.

Below are the relevant details. I'm not terribly savvy with gdb, so please
let me know what else I could/should examine from the core dump, as well as
anything else about the system/configuration.

Kind Regards,
-Joshua

#NB: some info in square brackets has been [redacted]
# grep postmaster /var/log/messages
Apr 10 13:18:32 [hostname] kernel: postmaster[17356]: segfault at 40 ip
0000000000710e2e sp 00007fffd193ca70 error 4 in postgres[400000+4ea000]

gdb /usr/pgsql-9.1/bin/postmaster -c core.17356
[...loading/reading symbols...]
Core was generated by `postgres: [username] [databasename]
[client_ipaddress](1500) SELECT '.
Program terminated with signal 11, Segmentation fault.
#0 ResourceOwnerEnlargeCatCacheRefs (owner=0x0) at resowner.c:605
605 if (owner->ncatrefs < owner->maxcatrefs)
(gdb) q

# uname -a
Linux [hostname] 2.6.32-358.2.1.el6.x86_64 #1 SMP Tue Mar 12 14:18:09 CDT
2013 x86_64 x86_64 x86_64 GNU/Linux
# cat /etc/redhat-release
Scientific Linux release 6.3 (Carbon)

# psql -U jberry
psql (9.1.9)
Type "help" for help.

jberry=# select version();
version
--------------------------------------------------------------------------------------------------------------
PostgreSQL 9.1.9 on x86_64-unknown-linux-gnu, compiled by gcc (GCC) 4.4.7
20120313 (Red Hat 4.4.7-3), 64-bit
(1 row)

#2Alvaro Herrera
alvherre@2ndquadrant.com
In reply to: Joshua Berry (#1)
Re: Segmentation fault with core dump

Joshua Berry escribió:

gdb /usr/pgsql-9.1/bin/postmaster -c core.17356
[...loading/reading symbols...]
Core was generated by `postgres: [username] [databasename]
[client_ipaddress](1500) SELECT '.
Program terminated with signal 11, Segmentation fault.
#0 ResourceOwnerEnlargeCatCacheRefs (owner=0x0) at resowner.c:605
605 if (owner->ncatrefs < owner->maxcatrefs)
(gdb) q

Run "bt" here please (maybe "bt full" is even more illuminating)

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#3Andres Freund
andres@anarazel.de
In reply to: Joshua Berry (#1)
Re: Segmentation fault with core dump

Hi,

On 2013-04-10 16:34:40 -0500, Joshua Berry wrote:

Below are the relevant details. I'm not terribly savvy with gdb, so please
let me know what else I could/should examine from the core dump, as well as
anything else about the system/configuration.

Kind Regards,
-Joshua

#NB: some info in square brackets has been [redacted]
# grep postmaster /var/log/messages
Apr 10 13:18:32 [hostname] kernel: postmaster[17356]: segfault at 40 ip
0000000000710e2e sp 00007fffd193ca70 error 4 in postgres[400000+4ea000]

gdb /usr/pgsql-9.1/bin/postmaster -c core.17356
[...loading/reading symbols...]
Core was generated by `postgres: [username] [databasename]
[client_ipaddress](1500) SELECT '.
Program terminated with signal 11, Segmentation fault.
#0 ResourceOwnerEnlargeCatCacheRefs (owner=0x0) at resowner.c:605
605 if (owner->ncatrefs < owner->maxcatrefs)
(gdb) q

Could you show the output of 'bt full'?

Greetings,

Andres Freund

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#4Joshua Berry
yoberi@gmail.com
In reply to: Andres Freund (#3)
Re: Segmentation fault with core dump

Hi Andres!

On Wed, Apr 10, 2013 at 4:49 PM, Andres Freund <andres@2ndquadrant.com>wrote:

Could you show the output of 'bt full'?

Program terminated with signal 11, Segmentation fault.
#0 ResourceOwnerEnlargeCatCacheRefs (owner=0x0) at resowner.c:605
605 if (owner->ncatrefs < owner->maxcatrefs)
(gdb) bt
#0 ResourceOwnerEnlargeCatCacheRefs (owner=0x0) at resowner.c:605
#1 0x00000000006e1382 in SearchCatCache (cache=0x2a1aad0,
v1=<value optimized out>, v2=<value optimized out>,
v3=<value optimized out>, v4=<value optimized out>) at catcache.c:1143
#2 0x00000000006ec69e in getTypeOutputInfo (type=20, typOutput=0x2a8ac30,
typIsVarlena=0x2a8ac38 "") at lsyscache.c:2438
#3 0x0000000000459027 in printtup_prepare_info (myState=0x2a50c40,
typeinfo=0x2e7fc50, numAttrs=42) at printtup.c:263
#4 0x00000000004593c4 in printtup (slot=0x2d14618, self=0x2a50c40)
at printtup.c:297
#5 0x00000000006376ca in RunFromStore (portal=0x2aa9360,
direction=<value optimized out>, count=10, dest=0x2a50c40) at
pquery.c:1121
#6 0x00000000006377b2 in PortalRunSelect (portal=0x2aa9360,
forward=<value optimized out>, count=10, dest=0x2a50c40) at pquery.c:939
#7 0x0000000000638c78 in PortalRun (portal=0x2aa9360, count=10,
isTopLevel=1 '\001', dest=0x2a50c40, altdest=0x2a50c40,
completionTag=0x7fffd193d0f0 "") at pquery.c:787
#8 0x000000000063661e in exec_execute_message (argc=<value optimized out>,
argv=<value optimized out>, dbname=0x298a150 "[dbname]",
username=<value optimized out>) at postgres.c:1965
#9 PostgresMain (argc=<value optimized out>, argv=<value optimized out>,
dbname=0x298a150 "[dbname]", username=<value optimized out>)
at postgres.c:4026
#10 0x00000000005f6c61 in BackendRun () at postmaster.c:3612
#11 BackendStartup () at postmaster.c:3302
#12 ServerLoop () at postmaster.c:1466
#13 0x00000000005f9431 in PostmasterMain (argc=<value optimized out>,
argv=<value optimized out>) at postmaster.c:1127
#14 0x000000000059a9b0 in main (argc=5, argv=0x2988480) at main.c:199
(gdb) bt full
#0 ResourceOwnerEnlargeCatCacheRefs (owner=0x0) at resowner.c:605
newmax = <value optimized out>
#1 0x00000000006e1382 in SearchCatCache (cache=0x2a1aad0,
v1=<value optimized out>, v2=<value optimized out>,
v3=<value optimized out>, v4=<value optimized out>) at catcache.c:1143
res = 1 '\001'
cur_skey = {{sk_flags = 0, sk_attno = -2, sk_strategy = 3,
sk_subtype = 0, sk_collation = 0, sk_func = {
fn_addr = 0x686640 <oideq>, fn_oid = 184, fn_nargs = 2,
fn_strict = 1 '\001', fn_retset = 0 '\000', fn_stats = 2
'\002',
fn_extra = 0x0, fn_mcxt = 0x298b108, fn_expr = 0x0},
sk_argument = 20}, {sk_flags = 0, sk_attno = 0, sk_strategy = 0,
sk_subtype = 0, sk_collation = 0, sk_func = {fn_addr = 0,
fn_oid = 0, fn_nargs = 0, fn_strict = 0 '\000',
fn_retset = 0 '\000', fn_stats = 0 '\000', fn_extra = 0x0,
fn_mcxt = 0x0, fn_expr = 0x0}, sk_argument = 0}, {sk_flags =
0,
sk_attno = 0, sk_strategy = 0, sk_subtype = 0, sk_collation = 0,
sk_func = {fn_addr = 0, fn_oid = 0, fn_nargs = 0,
fn_strict = 0 '\000', fn_retset = 0 '\000', fn_stats = 0
'\000',
fn_extra = 0x0, fn_mcxt = 0x0, fn_expr = 0x0}, sk_argument =
0},
{sk_flags = 0, sk_attno = 0, sk_strategy = 0, sk_subtype = 0,
sk_collation = 0, sk_func = {fn_addr = 0, fn_oid = 0,
fn_nargs = 0, fn_strict = 0 '\000', fn_retset = 0 '\000',
fn_stats = 0 '\000', fn_extra = 0x0, fn_mcxt = 0x0,
fn_expr = 0x0}, sk_argument = 0}}
hashValue = 2280326203
hashIndex = 59
elt = 0x7fc28648fb88
ct = 0x7fc28648fb78
relation = <value optimized out>
scandesc = <value optimized out>
ntp = <value optimized out>
#2 0x00000000006ec69e in getTypeOutputInfo (type=20, typOutput=0x2a8ac30,
typIsVarlena=0x2a8ac38 "") at lsyscache.c:2438
typeTuple = <value optimized out>
pt = <value optimized out>
__func__ = "getTypeOutputInfo"
#3 0x0000000000459027 in printtup_prepare_info (myState=0x2a50c40,
typeinfo=0x2e7fc50, numAttrs=42) at printtup.c:263
thisState = <value optimized out>
format = <value optimized out>
formats = 0x0
i = <value optimized out>
__func__ = "printtup_prepare_info"
#4 0x00000000004593c4 in printtup (slot=0x2d14618, self=0x2a50c40)
at printtup.c:297
typeinfo = <value optimized out>
myState = 0x2a50c40
buf = {data = 0x2aa9360 "x\376\243\002", len = 47269400, maxlen = 0,
cursor = 47269400}
natts = 42
i = <value optimized out>
#5 0x00000000006376ca in RunFromStore (portal=0x2aa9360,
direction=<value optimized out>, count=10, dest=0x2a50c40) at
pquery.c:1121
oldcontext = 0x2aca6f0
ok = <value optimized out>
current_tuple_count = 0
slot = 0x2d14618
#6 0x00000000006377b2 in PortalRunSelect (portal=0x2aa9360,
forward=<value optimized out>, count=10, dest=0x2a50c40) at pquery.c:939
queryDesc = 0x0
direction = ForwardScanDirection
nprocessed = <value optimized out>
__func__ = "PortalRunSelect"
#7 0x0000000000638c78 in PortalRun (portal=0x2aa9360, count=10,
isTopLevel=1 '\001', dest=0x2a50c40, altdest=0x2a50c40,
completionTag=0x7fffd193d0f0 "") at pquery.c:787
save_exception_stack = 0x7fffd193cfe0
save_context_stack = 0x0
local_sigjmp_buf = {{__jmpbuf = {140736709513424,
8412518331319730861,
44733280, 0, 4294967295, 3, -8412469024494566739,
8412517527857939117}, __mask_was_saved = 0, __saved_mask = {
__val = {76, 44316880, 5, 0, 44804496, 767, 5, 0, 4294967295,
3,
5565893, 11495616, 4746857, 140736709513424,
140736709513424,
0}}}}
result = <value optimized out>
nprocessed = <value optimized out>
saveTopTransactionResourceOwner = 0x2a439e0
saveTopTransactionContext = 0x2a438d0
saveActivePortal = 0x0
saveResourceOwner = 0x2a439e0
savePortalContext = 0x0
saveMemoryContext = 0x2a438d0
__func__ = "PortalRun"
#8 0x000000000063661e in exec_execute_message (argc=<value optimized out>,
argv=<value optimized out>, dbname=0x298a150 "[dbname]",
username=<value optimized out>) at postgres.c:1965
completed = <value optimized out>
execute_is_fetch = 1 '\001'
completionTag = "\000ELECT
3\000\000\241\361=\000\000\000pÑ\321\377\177\000\000\300@\231\002", '\000'
<repeats 12 times>"\200,
\355\232\002\000\000\000\000PÑ\321\377\177\000\000U\000`\377\377\377\377\377"
save_log_statement_stats = 0 '\000'
was_logged = <value optimized out>
dest = DestRemoteExecute
receiver = 0x2a50c40
portal = <value optimized out>
sourceText = 0x2d141b8 "declare \"SQL_CUR017CB040\" cursor with
hold for SELECT
anl.LAB,anl.JOB,anl.COMPANYCODE,anl.SAMPLETYPE,anl.COMPANYLAB,anl.CYLNO,anl.CONTAINERCODE,anl.DATEGCANALYSIS,anl.DATEREPORT,anl.SAMPLENAME,anl.FIE"...
prepStmtName = 0x817c44 "<unnamed>"
portalParams = 0x0
is_xact_command = <value optimized out>
msec_str = '\000' <repeats 16 times>, "1500\000\000\000\000\330@
\231\002\000\000\000"
#9 PostgresMain (argc=<value optimized out>, argv=<value optimized out>,
dbname=0x298a150 "[dbname]", username=<value optimized out>)
at postgres.c:4026
portal_name = 0x2a50420 "SQL_CUR017CB040"
max_rows = 10
firstchar = <value optimized out>
input_message = {data = 0x2a50420 "SQL_CUR017CB040", len = 20,
maxlen = 1024, cursor = 20}
local_sigjmp_buf = {{__jmpbuf = {140736709513392,
8412515096121983661,
1, 1, -9187201950435737471, 0, -8412469024567967059,
8412517530690536109}, __mask_was_saved = 1, __saved_mask = {
__val = {0, 0, 0, 18446462598732840960, 18446744073709551615,
0,
0, 0, 0, 0, 0, 266046903056, 140486762587344, 0, 4294967295,
0}}}}
send_ready_for_query = 0 '\000'
__func__ = "PostgresMain"
#10 0x00000000005f6c61 in BackendRun () at postmaster.c:3612
ac = 1
secs = 418739329
usecs = 43047
i = <value optimized out>
av = 0x298a398
maxac = <value optimized out>
#11 BackendStartup () at postmaster.c:3302
bn = 0x29940c0
pid = 0
#12 ServerLoop () at postmaster.c:1466
rmask = {fds_bits = {32, 0 <repeats 15 times>}}
selres = <value optimized out>
readmask = {fds_bits = {224, 0 <repeats 15 times>}}
nSockets = 8
now = <value optimized out>
last_touch_time = 1365422110
__func__ = "ServerLoop"
#13 0x00000000005f9431 in PostmasterMain (argc=<value optimized out>,
argv=<value optimized out>) at postmaster.c:1127
opt = <value optimized out>
status = <value optimized out>
userDoption = <value optimized out>
listen_addr_saved = 1 '\001'
i = <value optimized out>
__func__ = "PostmasterMain"
#14 0x000000000059a9b0 in main (argc=5, argv=0x2988480) at main.c:199
No locals.
(gdb)

#5Andres Freund
andres@anarazel.de
In reply to: Joshua Berry (#4)
Re: Segmentation fault with core dump

On 2013-04-10 16:53:12 -0500, Joshua Berry wrote:

#7 0x0000000000638c78 in PortalRun (portal=0x2aa9360, count=10,
isTopLevel=1 '\001', dest=0x2a50c40, altdest=0x2a50c40,
completionTag=0x7fffd193d0f0 "") at pquery.c:787
save_exception_stack = 0x7fffd193cfe0
save_context_stack = 0x0
local_sigjmp_buf = {{__jmpbuf = {140736709513424,
8412518331319730861,
44733280, 0, 4294967295, 3, -8412469024494566739,
8412517527857939117}, __mask_was_saved = 0, __saved_mask = {
__val = {76, 44316880, 5, 0, 44804496, 767, 5, 0, 4294967295,
3,
5565893, 11495616, 4746857, 140736709513424,
140736709513424,
0}}}}
result = <value optimized out>
nprocessed = <value optimized out>
saveTopTransactionResourceOwner = 0x2a439e0
saveTopTransactionContext = 0x2a438d0
saveActivePortal = 0x0
saveResourceOwner = 0x2a439e0
savePortalContext = 0x0
saveMemoryContext = 0x2a438d0
__func__ = "PortalRun"

Ok, so while we have a valid resource owner up to here, portal->resonwer
is NULL.

Could you 'up' until youre in this frame and then do 'print *portal'?

Thanks,

Andres Freund

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#6Joshua Berry
yoberi@gmail.com
In reply to: Andres Freund (#5)
Re: Segmentation fault with core dump

Ok, so while we have a valid resource owner up to here, portal->resonwer
is NULL.

Could you 'up' until youre in this frame and then do 'print *portal'?

#7 0x0000000000638c78 in PortalRun (portal=0x2aa9360, count=10,
isTopLevel=1 '\001', dest=0x2a50c40, altdest=0x2a50c40,
completionTag=0x7fffd193d0f0 "") at pquery.c:787
787 nprocessed =
PortalRunSelect(portal, true, count, dest);
(gdb) print *portal
$1 = {name = 0x2a3fe78 "SQL_CUR017CB040", prepStmtName = 0x0,
heap = 0x2aca6f0, resowner = 0x0, cleanup = 0x535d30 <PortalCleanup>,
createSubid = 0,
sourceText = 0x2d141b8 "declare \"SQL_CUR017CB040\" cursor with hold for
SELECT
anl.LAB,anl.JOB,anl.COMPANYCODE,anl.SAMPLETYPE,anl.COMPANYLAB,anl.CYLNO,anl.CONTAINERCODE,anl.DATEGCANALYSIS,anl.DATEREPORT,anl.SAMPLENAME,anl.FIE"...,
commandTag = 0x828f32 "SELECT", stmts = 0x2d145e8, cplan = 0x0,
portalParams = 0x0, strategy = PORTAL_ONE_SELECT, cursorOptions = 52,
status = PORTAL_ACTIVE, portalPinned = 0 '\000', queryDesc = 0x0,
tupDesc = 0x2e7fc50, formats = 0x0, holdStore = 0x2d0d430,
holdContext = 0x2f4e290, atStart = 0 '\000', atEnd = 0 '\000',
posOverflow = 0 '\000', portalPos = 10, creation_time = 418933112934458,
visible = 1 '\001'}
(gdb)

#7Tom Lane
tgl@sss.pgh.pa.us
In reply to: Andres Freund (#5)
Re: Segmentation fault with core dump

Andres Freund <andres@2ndquadrant.com> writes:

Ok, so while we have a valid resource owner up to here, portal->resonwer
is NULL.

Yeah, that's what I'm guessing. Given the exposed reference to a cursor
WITH HOLD, it seems likely that the reason the portal has no resowner
is that PreCommit_Portals() got rid of it when the cursor was held.
However, if that were the explanation, it's not clear how come this
isn't falling over all the time for everybody who uses holdable cursors.
Any cache flush happening just before fetching from a holdable cursor
ought to do it ...

(Wanders away wondering just how much the regression tests exercise
holdable cursors.)

regards, tom lane

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#8Tom Lane
tgl@sss.pgh.pa.us
In reply to: Tom Lane (#7)
Re: Segmentation fault with core dump

I wrote:

(Wanders away wondering just how much the regression tests exercise
holdable cursors.)

And the answer is they're not testing this code path at all, because if
you do
DECLARE c CURSOR WITH HOLD FOR ...
FETCH ALL FROM c;
then the second query executes with a portal (and resource owner)
created to execute the FETCH command, not directly on the held portal.

After a little bit of thought I'm not sure it's even possible to
reproduce this problem with libpq, because it doesn't expose any way to
issue a bare protocol Execute command against a pre-existing portal.
(I had thought psqlOBC went through libpq, but maybe it's playing some
games here.)

Anyway, I'm thinking the appropriate fix might be like this

-		CurrentResourceOwner = portal->resowner;
+		if (portal->resowner)
+			CurrentResourceOwner = portal->resowner;

in several places in pquery.c; that is, keep using
TopTransactionResourceOwner if the portal doesn't have its own.

A more general but probably much more invasive solution would be to fake
up an intermediate portal when pulling data from a held portal, to
more closely approximate the explicit-FETCH case.

regards, tom lane

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#9Andres Freund
andres@anarazel.de
In reply to: Joshua Berry (#6)
Re: Segmentation fault with core dump

On 2013-04-10 17:31:09 -0500, Joshua Berry wrote:

Ok, so while we have a valid resource owner up to here, portal->resonwer
is NULL.

Could you 'up' until youre in this frame and then do 'print *portal'?

#7 0x0000000000638c78 in PortalRun (portal=0x2aa9360, count=10,
isTopLevel=1 '\001', dest=0x2a50c40, altdest=0x2a50c40,
completionTag=0x7fffd193d0f0 "") at pquery.c:787
787 nprocessed =
PortalRunSelect(portal, true, count, dest);
(gdb) print *portal
$1 = {name = 0x2a3fe78 "SQL_CUR017CB040", prepStmtName = 0x0,
heap = 0x2aca6f0, resowner = 0x0, cleanup = 0x535d30 <PortalCleanup>,
createSubid = 0,
sourceText = 0x2d141b8 "declare \"SQL_CUR017CB040\" cursor with hold for
SELECT
anl.LAB,anl.JOB,anl.COMPANYCODE,anl.SAMPLETYPE,anl.COMPANYLAB,anl.CYLNO,anl.CONTAINERCODE,anl.DATEGCANALYSIS,anl.DATEREPORT,anl.SAMPLENAME,anl.FIE"...,
commandTag = 0x828f32 "SELECT", stmts = 0x2d145e8, cplan = 0x0,
portalParams = 0x0, strategy = PORTAL_ONE_SELECT, cursorOptions = 52,
status = PORTAL_ACTIVE, portalPinned = 0 '\000', queryDesc = 0x0,
tupDesc = 0x2e7fc50, formats = 0x0, holdStore = 0x2d0d430,
holdContext = 0x2f4e290, atStart = 0 '\000', atEnd = 0 '\000',
posOverflow = 0 '\000', portalPos = 10, creation_time = 418933112934458,
visible = 1 '\001'}
(gdb)

Ok, I might be seeing whats going on here. Could you go to 'printtup'
and print *myState, *myState->attrinfo, *typpeinfo?

Tom: It looks to me like printtup_prepare_info won't normally be called
in an held cursor. But if some concurrent DDL changed the number of
columns in typeinfo vs thaose in the the receiver that could explain the
issue and why its not seen all the time, right?

Greetings,

Andres Freund

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#10Andres Freund
andres@anarazel.de
In reply to: Tom Lane (#8)
Re: Segmentation fault with core dump

On 2013-04-10 19:06:12 -0400, Tom Lane wrote:

I wrote:

(Wanders away wondering just how much the regression tests exercise
holdable cursors.)

And the answer is they're not testing this code path at all, because if
you do
DECLARE c CURSOR WITH HOLD FOR ...
FETCH ALL FROM c;
then the second query executes with a portal (and resource owner)
created to execute the FETCH command, not directly on the held portal.

But in that path CurrentResourceOwner gets reset to portal->resowner as
well (see PortalRunFetch())?

Greetings,

Andres Freund

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#11Tom Lane
tgl@sss.pgh.pa.us
In reply to: Andres Freund (#9)
Re: Segmentation fault with core dump

Andres Freund <andres@2ndquadrant.com> writes:

Tom: It looks to me like printtup_prepare_info won't normally be called
in an held cursor. But if some concurrent DDL changed the number of
columns in typeinfo vs thaose in the the receiver that could explain the
issue and why its not seen all the time, right?

It looks to me like there are probably two triggering conditions:

1. Client is doing a direct protocol Execute on a held-cursor portal.

2. Cache flush occurs to drop the syscache entries needed by
getTypeOutputInfo. (Otherwise, they'd still be around from when the
held cursor was created.)

The first of these explains why we don't see it in the
CLOBBER_CACHE_ALWAYS buildfarm runs, and the second one explains why
Joshua is only seeing it intermittently and not every darn time his
application does that.

regards, tom lane

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#12Joshua Berry
yoberi@gmail.com
In reply to: Andres Freund (#9)
Re: Segmentation fault with core dump

Ok, I might be seeing whats going on here. Could you go to 'printtup'
and print *myState, *myState->attrinfo, *typpeinfo?

#4 0x00000000004593c4 in printtup (slot=0x2d14618, self=0x2a50c40)
at printtup.c:297
297 printtup_prepare_info(myState, typeinfo, natts);
(gdb) print *myState, *myState->attrinfo, *typeinfo
value has been optimized out
(gdb)

#13Andres Freund
andres@anarazel.de
In reply to: Joshua Berry (#12)
Re: Segmentation fault with core dump

On 2013-04-10 18:25:24 -0500, Joshua Berry wrote:

Ok, I might be seeing whats going on here. Could you go to 'printtup'
and print *myState, *myState->attrinfo, *typpeinfo?

#4 0x00000000004593c4 in printtup (slot=0x2d14618, self=0x2a50c40)
at printtup.c:297
297 printtup_prepare_info(myState, typeinfo, natts);
(gdb) print *myState, *myState->attrinfo, *typeinfo
value has been optimized out

Hm. Make that a
print *(DR_printtup *) self
print *((DR_printtup *) self)->attrinfo
print *slot->tts_tupleDescriptor

then.

Thanks,

Andres Freund

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#14Tom Lane
tgl@sss.pgh.pa.us
In reply to: Andres Freund (#10)
Re: Segmentation fault with core dump

Andres Freund <andres@2ndquadrant.com> writes:

On 2013-04-10 19:06:12 -0400, Tom Lane wrote:

And the answer is they're not testing this code path at all, because if
you do
DECLARE c CURSOR WITH HOLD FOR ...
FETCH ALL FROM c;
then the second query executes with a portal (and resource owner)
created to execute the FETCH command, not directly on the held portal.

But in that path CurrentResourceOwner gets reset to portal->resowner as
well (see PortalRunFetch())?

Right, but that's the FETCH's portal, which is a regular "live" portal
that has a ResOwner.

regards, tom lane

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#15Andres Freund
andres@anarazel.de
In reply to: Tom Lane (#8)
Re: Segmentation fault with core dump

On 2013-04-10 19:06:12 -0400, Tom Lane wrote:

I wrote:

(Wanders away wondering just how much the regression tests exercise
holdable cursors.)

And the answer is they're not testing this code path at all, because if
you do
DECLARE c CURSOR WITH HOLD FOR ...
FETCH ALL FROM c;
then the second query executes with a portal (and resource owner)
created to execute the FETCH command, not directly on the held portal.

After a little bit of thought I'm not sure it's even possible to
reproduce this problem with libpq, because it doesn't expose any way to
issue a bare protocol Execute command against a pre-existing portal.
(I had thought psqlOBC went through libpq, but maybe it's playing some
games here.)

Hm. PQexecPrepared() looks like it can do that.

Greetings,

Andres Freund

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#16Joshua Berry
yoberi@gmail.com
In reply to: Andres Freund (#13)
Re: Segmentation fault with core dump

Hm. Make that a

print *(DR_printtup *) self
print *((DR_printtup *) self)->attrinfo
print *slot->tts_tupleDescriptor

(gdb) print *(DR_printtup *) self
$2 = {pub = {receiveSlot = 0x459390 <printtup>,
rStartup = 0x459550 <printtup_startup>,
rShutdown = 0x458a20 <printtup_shutdown>,
rDestroy = 0x458a10 <printtup_destroy>, mydest = DestRemoteExecute},
portal = 0x2aa9360, sendDescrip = 0 '\000', attrinfo = 0x2e7fc50,
nattrs = 42, myinfo = 0x2a8ac30}
(gdb) print *((DR_printtup *) self)->attrinfo
$3 = {natts = 42, attrs = 0x2e7fc78, constr = 0x0, tdtypeid = 2249,
tdtypmod = -1, tdhasoid = 0 '\000', tdrefcount = -1}
(gdb) print *slot->tts_tupleDescriptor
$4 = {natts = 42, attrs = 0x2e7fc78, constr = 0x0, tdtypeid = 2249,
tdtypmod = -1, tdhasoid = 0 '\000', tdrefcount = -1}
(gdb)

#17Andres Freund
andres@anarazel.de
In reply to: Tom Lane (#14)
Re: Segmentation fault with core dump

On 2013-04-10 19:29:06 -0400, Tom Lane wrote:

Andres Freund <andres@2ndquadrant.com> writes:

On 2013-04-10 19:06:12 -0400, Tom Lane wrote:

And the answer is they're not testing this code path at all, because if
you do
DECLARE c CURSOR WITH HOLD FOR ...
FETCH ALL FROM c;
then the second query executes with a portal (and resource owner)
created to execute the FETCH command, not directly on the held portal.

But in that path CurrentResourceOwner gets reset to portal->resowner as
well (see PortalRunFetch())?

Right, but that's the FETCH's portal, which is a regular "live" portal
that has a ResOwner.

I don't think so?

standard_ProcessUtility:
PerformPortalFetch:
/* get the portal from the portal name */
portal = GetPortalByName(stmt->portalname);
...
/* Do it */
nprocessed = PortalRunFetch(portal,
stmt->direction,
stmt->howMany,
dest);
PortalRunFetch:
PG_TRY();
{
ActivePortal = portal;
CurrentResourceOwner = portal->resowner;

So it seems to trigger a very similar codepath?

Greetings,

Andres Freund

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#18Andres Freund
andres@anarazel.de
In reply to: Tom Lane (#8)
Re: Segmentation fault with core dump

On 2013-04-10 19:06:12 -0400, Tom Lane wrote:

I wrote:

(Wanders away wondering just how much the regression tests exercise
holdable cursors.)

And the answer is they're not testing this code path at all, because if
you do
DECLARE c CURSOR WITH HOLD FOR ...
FETCH ALL FROM c;
then the second query executes with a portal (and resource owner)
created to execute the FETCH command, not directly on the held portal.

After a little bit of thought I'm not sure it's even possible to
reproduce this problem with libpq, because it doesn't expose any way to
issue a bare protocol Execute command against a pre-existing portal.
(I had thought psqlOBC went through libpq, but maybe it's playing some
games here.)

Anyway, I'm thinking the appropriate fix might be like this

-		CurrentResourceOwner = portal->resowner;
+		if (portal->resowner)
+			CurrentResourceOwner = portal->resowner;

in several places in pquery.c; that is, keep using
TopTransactionResourceOwner if the portal doesn't have its own.

A more general but probably much more invasive solution would be to fake
up an intermediate portal when pulling data from a held portal, to
more closely approximate the explicit-FETCH case.

We could also allocate a new resowner for the duration of that
transaction. That would get reassigned to the transactions resowner in
PreCommit_Portals (after a slight change there).
That actually seems simple enough?

Greetings,

Andres Freund

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#19Joshua Berry
yoberi@gmail.com
In reply to: Andres Freund (#18)
Re: Segmentation fault with core dump

| I'm using PG 9.1.9 with a client application using various versions of
the
| pgsqlODBC driver on Windows. Cursors are used heavily, as well as some
pretty
| heavy trigger queries on db writes which update several materialized
views.
|
| The server has 48GB RAM installed, PG is configured for 12GB shared
buffers,
| 8MB max_stack_depth, 32MB temp_buffers, and 2MB work_mem. Most of the
other
| settings are defaults.
|
| The server will seg fault from every few days to up to two weeks. Each
time
| one of the postgres server processes seg faults, the server gets
terminated by
| signal 11, restarts in recovery for up to 30 seconds, after which time it
| accepts connections as if nothing ever happened. Unfortunately all the
open
| cursors and connections are lost, so the client apps are left in a bad
state.
|
| Seg faults have also occurred with PG 8.4. ... I migrated the database to
a
| server running PG9.1 with the hopes that the problem would disappear, but
it
| has not. So now I'm starting to debug.
|
| # uname -a
| Linux [hostname] 2.6.32-358.2.1.el6.x86_64 #1 SMP Tue Mar 12 14:18:09 CDT
2013
| x86_64 x86_64 x86_64 GNU/Linux
| # cat /etc/redhat-release
| Scientific Linux release 6.3 (Carbon)
|
| # psql -U jberry
| psql (9.1.9)
| Type "help" for help.
|
| jberry=# select version();
| version
|
-------------------------------------------------------------------------------
| PostgreSQL 9.1.9 on x86_64-unknown-linux-gnu, compiled by gcc (GCC)
4.4.7
| 20120313 (Red Hat 4.4.7-3), 64-bit
| (1 row)

I've had another postmaster segfault on my production server. It appears to
be the same failure as the last one nearly a month ago, but I wanted to
post the gdb bt details in case it helps shed light on the issue. Please
let me know if anyone would like to drill into the dumped core with greater
detail. Both the OS and PG versions remain unchanged.

Kind Regards,
-Joshua

From the PG log:
2013-05-07 08:48:35 CDT <%@> LOG: server process (PID 12367) was
terminated by signal 11: Segmentation fault

From /var/log/messages
May 7 08:48:17 active kernel: postmaster[12367]: segfault at 40 ip
0000000000710e2e sp 00007fffdcaeedf0 error 4 in postgres[400000+4ea000]

(gdb) bt full
#0 ResourceOwnerEnlargeCatCacheRefs (owner=0x0) at resowner.c:605
newmax = <value optimized out>
#1 0x00000000006e1382 in SearchCatCache (cache=0x25bf270, v1=<value
optimized out>, v2=<value optimized out>, v3=<value optimized out>,
v4=<value optimized out>) at catcache.c:1143
res = 1 '\001'
cur_skey = {{sk_flags = 0, sk_attno = -2, sk_strategy = 3,
sk_subtype = 0, sk_collation = 0, sk_func = {fn_addr = 0x686640 <oideq>,
fn_oid = 184, fn_nargs = 2, fn_strict = 1 '\001',
fn_retset = 0 '\000', fn_stats = 2 '\002', fn_extra = 0x0,
fn_mcxt = 0x252f108, fn_expr = 0x0}, sk_argument = 20}, {sk_flags = 0,
sk_attno = 0, sk_strategy = 0, sk_subtype = 0,
sk_collation = 0, sk_func = {fn_addr = 0, fn_oid = 0, fn_nargs
= 0, fn_strict = 0 '\000', fn_retset = 0 '\000', fn_stats = 0 '\000',
fn_extra = 0x0, fn_mcxt = 0x0, fn_expr = 0x0},
sk_argument = 0}, {sk_flags = 0, sk_attno = 0, sk_strategy = 0,
sk_subtype = 0, sk_collation = 0, sk_func = {fn_addr = 0, fn_oid = 0,
fn_nargs = 0, fn_strict = 0 '\000',
fn_retset = 0 '\000', fn_stats = 0 '\000', fn_extra = 0x0,
fn_mcxt = 0x0, fn_expr = 0x0}, sk_argument = 0}, {sk_flags = 0, sk_attno =
0, sk_strategy = 0, sk_subtype = 0,
sk_collation = 0, sk_func = {fn_addr = 0, fn_oid = 0, fn_nargs
= 0, fn_strict = 0 '\000', fn_retset = 0 '\000', fn_stats = 0 '\000',
fn_extra = 0x0, fn_mcxt = 0x0, fn_expr = 0x0},
sk_argument = 0}}
hashValue = 2280326203
hashIndex = 59
elt = 0x7fe0742cf228
ct = 0x7fe0742cf218
relation = <value optimized out>
scandesc = <value optimized out>
ntp = <value optimized out>
#2 0x00000000006ec69e in getTypeOutputInfo (type=20, typOutput=0x277dea0,
typIsVarlena=0x277dea8 "") at lsyscache.c:2438
typeTuple = <value optimized out>
pt = <value optimized out>
__func__ = "getTypeOutputInfo"
#3 0x0000000000459027 in printtup_prepare_info (myState=0x25d53d0,
typeinfo=0x2686640, numAttrs=84) at printtup.c:263
thisState = <value optimized out>
format = <value optimized out>
formats = 0x0
i = <value optimized out>
__func__ = "printtup_prepare_info"
#4 0x00000000004593c4 in printtup (slot=0x26fd960, self=0x25d53d0) at
printtup.c:297
typeinfo = <value optimized out>
myState = 0x25d53d0
buf = {data = 0x262cf40 "\320I\\\002", len = 40884576, maxlen = 0,
cursor = 40884576}
natts = 84
i = <value optimized out>
#5 0x00000000006376ca in RunFromStore (portal=0x262cf40, direction=<value
optimized out>, count=10, dest=0x25d53d0) at pquery.c:1121
oldcontext = 0x295a470
ok = <value optimized out>
current_tuple_count = 0
slot = 0x26fd960
#6 0x00000000006377b2 in PortalRunSelect (portal=0x262cf40, forward=<value
optimized out>, count=10, dest=0x25d53d0) at pquery.c:939
queryDesc = 0x0
direction = ForwardScanDirection
nprocessed = <value optimized out>
__func__ = "PortalRunSelect"
#7 0x0000000000638c78 in PortalRun (portal=0x262cf40, count=10,
isTopLevel=1 '\001', dest=0x25d53d0, altdest=0x25d53d0,
completionTag=0x7fffdcaef470 "") at pquery.c:787
save_exception_stack = 0x7fffdcaef360
save_context_stack = 0x0
local_sigjmp_buf = {{__jmpbuf = {140736895841360,
9079525024474526506, 40030016, 0, 4294967295, 3, -9079456159289380054,
9079524170016813866}, __mask_was_saved = 0, __saved_mask = {
__val = {39139104, 140736895840832, 64, 39668656, 0, 0, 80,
38984240, 8640448, 0, 140736895841360, 0, 40030016, 140736895841360,
140736895841360, 0}}}}
result = <value optimized out>
nprocessed = <value optimized out>
saveTopTransactionResourceOwner = 0x25c8170
saveTopTransactionContext = 0x25c8060
saveActivePortal = 0x0
saveResourceOwner = 0x2748af0
savePortalContext = 0x0
saveMemoryContext = 0x295b020
__func__ = "PortalRun"
#8 0x000000000063661e in exec_execute_message (argc=<value optimized out>,
argv=<value optimized out>, dbname=0x252e150 "[dbname]", username=<value
optimized out>) at postgres.c:1965
completed = <value optimized out>
execute_is_fetch = 1 '\001'
completionTag = "\000ELECT
3\000\000\241\361=\000\000\000\360\364\256\334\377\177\000\000\200/U\002",
'\000' <repeats 12 times>, "
5U\002\000\000\000\000\320\364\256\334\377\177\000\000U\000`\377\377\377\377\377"
save_log_statement_stats = 0 '\000'
was_logged = <value optimized out>
dest = DestRemoteExecute
receiver = 0x25d53d0
portal = <value optimized out>
sourceText = 0x2644f10 "declare \"SQL_CUR02F082B0\" cursor with
hold for SELECT
job.JOB,job.COMPANYCODE,job.RECDBYCODE,job.PROJECT,job.REMARKS,job.JOBTYPE_ID,job.PRIORITY,job.LABLOC_ID,---Type
<return> to continue, or q <return> to quit---
jobsch.JOB,jobsch.ISOFFLINE,jobsch.COMPAN"...
prepStmtName = 0x817c44 "<unnamed>"
portalParams = 0x0
is_xact_command = <value optimized out>
msec_str = '\000' <repeats 16 times>,
"59423\000\000\000\230/U\002\000\000\000"
#9 PostgresMain (argc=<value optimized out>, argv=<value optimized out>,
dbname=0x252e150 "[dbname]", username=<value optimized out>) at
postgres.c:4026
portal_name = 0x25d4bb0 "SQL_CUR02F082B0"
max_rows = 10
firstchar = <value optimized out>
input_message = {data = 0x25d4bb0 "SQL_CUR02F082B0", len = 20,
maxlen = 1024, cursor = 20}
local_sigjmp_buf = {{__jmpbuf = {140736895841328,
9079528712728408874, 1, 1, -9187201950435737471, 0, -9079456159413112022,
9079524172817429290}, __mask_was_saved = 1, __saved_mask = {
__val = {0, 0, 0, 18446462598732840960, 18446744073709551615,
0, 0, 0, 0, 0, 0, 266046903056, 140615307920592, 0, 4294967295, 0}}}}
send_ready_for_query = 0 '\000'
__func__ = "PostgresMain"
#10 0x00000000005f6c61 in BackendRun () at postmaster.c:3612
ac = 1
secs = 421182656
usecs = 495798
i = <value optimized out>
av = 0x252e398
maxac = <value optimized out>
#11 BackendStartup () at postmaster.c:3302
bn = 0x2552f80
pid = 0
#12 ServerLoop () at postmaster.c:1466
rmask = {fds_bits = {8, 0 <repeats 15 times>}}
selres = <value optimized out>
readmask = {fds_bits = {56, 0 <repeats 15 times>}}
nSockets = 6
now = <value optimized out>
last_touch_time = 1367867385
__func__ = "ServerLoop"
#13 0x00000000005f9431 in PostmasterMain (argc=<value optimized out>,
argv=<value optimized out>) at postmaster.c:1127
opt = <value optimized out>
status = <value optimized out>
userDoption = <value optimized out>
listen_addr_saved = 1 '\001'
i = <value optimized out>
__func__ = "PostmasterMain"
#14 0x000000000059a9b0 in main (argc=5, argv=0x252c480) at main.c:199
No locals.
(gdb)

Kind Regards,
-Joshua

On Fri, Apr 12, 2013 at 6:12 AM, Andres Freund <andres@2ndquadrant.com>wrote:

Show quoted text

On 2013-04-10 19:06:12 -0400, Tom Lane wrote:

I wrote:

(Wanders away wondering just how much the regression tests exercise
holdable cursors.)

And the answer is they're not testing this code path at all, because if
you do
DECLARE c CURSOR WITH HOLD FOR ...
FETCH ALL FROM c;
then the second query executes with a portal (and resource owner)
created to execute the FETCH command, not directly on the held portal.

After a little bit of thought I'm not sure it's even possible to
reproduce this problem with libpq, because it doesn't expose any way to
issue a bare protocol Execute command against a pre-existing portal.
(I had thought psqlOBC went through libpq, but maybe it's playing some
games here.)

Anyway, I'm thinking the appropriate fix might be like this

-             CurrentResourceOwner = portal->resowner;
+             if (portal->resowner)
+                     CurrentResourceOwner = portal->resowner;

in several places in pquery.c; that is, keep using
TopTransactionResourceOwner if the portal doesn't have its own.

A more general but probably much more invasive solution would be to fake
up an intermediate portal when pulling data from a held portal, to
more closely approximate the explicit-FETCH case.

We could also allocate a new resowner for the duration of that
transaction. That would get reassigned to the transactions resowner in
PreCommit_Portals (after a slight change there).
That actually seems simple enough?

Greetings,

Andres Freund

#20Hiroshi Inoue
Inoue@tpf.co.jp
In reply to: Joshua Berry (#19)
Re: Segmentation fault with core dump

Hi,

(2013/05/09 1:39), Joshua Berry wrote:

| I'm using PG 9.1.9 with a client application using various versions of
the
| pgsqlODBC driver on Windows. Cursors are used heavily, as well as some
pretty
| heavy trigger queries on db writes which update several materialized
views.
|
| The server has 48GB RAM installed, PG is configured for 12GB shared
buffers,
| 8MB max_stack_depth, 32MB temp_buffers, and 2MB work_mem. Most of the
other
| settings are defaults.
|
| The server will seg fault from every few days to up to two weeks. Each
time
| one of the postgres server processes seg faults, the server gets
terminated by
| signal 11, restarts in recovery for up to 30 seconds, after which time it
| accepts connections as if nothing ever happened. Unfortunately all the
open
| cursors and connections are lost, so the client apps are left in a bad
state.
|
| Seg faults have also occurred with PG 8.4. ... I migrated the database
to a
| server running PG9.1 with the hopes that the problem would disappear,
but it
| has not. So now I'm starting to debug.
|
| # uname -a
| Linux [hostname] 2.6.32-358.2.1.el6.x86_64 #1 SMP Tue Mar 12 14:18:09
CDT 2013
| x86_64 x86_64 x86_64 GNU/Linux
| # cat /etc/redhat-release
| Scientific Linux release 6.3 (Carbon)
|
| # psql -U jberry
| psql (9.1.9)
| Type "help" for help.
|
| jberry=# select version();
| version
|
-------------------------------------------------------------------------------
| PostgreSQL 9.1.9 on x86_64-unknown-linux-gnu, compiled by gcc (GCC)
4.4.7
| 20120313 (Red Hat 4.4.7-3), 64-bit
| (1 row)

I've had another postmaster segfault on my production server. It appears
to be the same failure as the last one nearly a month ago, but I wanted
to post the gdb bt details in case it helps shed light on the issue.
Please let me know if anyone would like to drill into the dumped core
with greater detail. Both the OS and PG versions remain unchanged.

Kind Regards,
-Joshua

On Fri, Apr 12, 2013 at 6:12 AM, Andres Freund <andres@2ndquadrant.com
<mailto:andres@2ndquadrant.com>> wrote:

On 2013-04-10 19:06:12 -0400, Tom Lane wrote:

I wrote:

(Wanders away wondering just how much the regression tests exercise
holdable cursors.)

And the answer is they're not testing this code path at all,

because if

you do
DECLARE c CURSOR WITH HOLD FOR ...
FETCH ALL FROM c;
then the second query executes with a portal (and resource owner)
created to execute the FETCH command, not directly on the held

portal.

After a little bit of thought I'm not sure it's even possible to
reproduce this problem with libpq, because it doesn't expose any

way to

issue a bare protocol Execute command against a pre-existing portal.
(I had thought psqlOBC went through libpq, but maybe it's playing

some

games here.)

Anyway, I'm thinking the appropriate fix might be like this

-             CurrentResourceOwner = portal->resowner;
+             if (portal->resowner)
+                     CurrentResourceOwner = portal->resowner;

in several places in pquery.c; that is, keep using
TopTransactionResourceOwner if the portal doesn't have its own.

A more general but probably much more invasive solution would be

to fake

up an intermediate portal when pulling data from a held portal, to
more closely approximate the explicit-FETCH case.

We could also allocate a new resowner for the duration of that
transaction. That would get reassigned to the transactions resowner in
PreCommit_Portals (after a slight change there).
That actually seems simple enough?

I made some changes to multi thread handling of psqlodbc driver.
It's also better to fix the crash at backend side.

I made 2 patches.
The 1st one temporarily changes CurrentResourceOwner to
CurTransactionResourceOwner during catalog cache handling.
The 2nd one allocates a new resource owner for held portals.
Both fix the crash in my test case.

regards,
Hiroshi Inoue

Attachments:

holdable_cursor_printtup.patchtext/x-patch; name=holdable_cursor_printtup.patchDownload+16-0
holdable_cursor_resowner.patchtext/x-patch; name=holdable_cursor_resowner.patchDownload+80-3
#21Tom Lane
tgl@sss.pgh.pa.us
In reply to: Hiroshi Inoue (#20)
#22Hiroshi Inoue
Inoue@tpf.co.jp
In reply to: Tom Lane (#21)