Slow SELECT

Started by Frank Millmanalmost 6 years ago16 messagesgeneral
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#1Frank Millman
frank@chagford.com

Hi all

I have a SELECT that runs over 5 times slower on PostgreSQL compared
with Sql Server and sqlite3. I am trying to understand why.

I have a table that looks like this (simplified) -

CREATE TABLE my_table (
row_id SERIAL PRIMARY KEY,
deleted_id INT DEFAULT 0,
fld_1 INT REFERENCES table_1(row_id),
fld_2 INT REFERENCES table_2(row_id),
fld_3 INT REFERENCES table_3(row_id),
fld_4 INT REFERENCES table_4(row_id),
tran_date DATE,
tran_total DEC(21,2)
);

CREATE UNIQUE INDEX my_table_ndx ON my_table (fld_1, fld_2, fld_3,
fld_4, tran_date) WHERE deleted_id = 0;

The table sizes are -
my_table : 167 rows
table_1 : 21 rows
table_2 : 11 rows
table_3 : 3 rows
table_4 : 16 rows

Therefore for each tran_date in my_table there are potentially
21x11x3x16 = 11088 rows. Most will be null.

I want to select the row_id for the last tran_date for each of those
potential groups. This is my select -

SELECT (
SELECT a.row_id FROM my_table a
WHERE a.fld_1 = b.row_id
AND a.fld_2 = c.row_id
AND a.fld_3 = d.row_id
AND a.fld_4 = e.row_id
AND a.deleted_id = 0
ORDER BY a.tran_date DESC LIMIT 1
)
FROM table_1 b, table_2 c, table_3 d, table_4 e

Out of 11088 rows selected, 103 are not null.

On identical data, this takes 0.06 sec on SQL Server, 0.04 sec on
sqlite3, and 0.31 sec on PostgreSQL.

I have looked at the EXPLAIN, but I don't really know what to look for.
I can supply it if that would help.

Thanks for any advice.

Frank Millman

#2Olivier Gautherot
ogautherot@gautherot.net
In reply to: Frank Millman (#1)
Re: Slow SELECT

Hi Frank,

On Tue, May 26, 2020 at 9:23 AM Frank Millman <frank@chagford.com> wrote:

Hi all

I have a SELECT that runs over 5 times slower on PostgreSQL compared
with Sql Server and sqlite3. I am trying to understand why.

I have a table that looks like this (simplified) -

CREATE TABLE my_table (
row_id SERIAL PRIMARY KEY,
deleted_id INT DEFAULT 0,
fld_1 INT REFERENCES table_1(row_id),
fld_2 INT REFERENCES table_2(row_id),
fld_3 INT REFERENCES table_3(row_id),
fld_4 INT REFERENCES table_4(row_id),
tran_date DATE,
tran_total DEC(21,2)
);

CREATE UNIQUE INDEX my_table_ndx ON my_table (fld_1, fld_2, fld_3,
fld_4, tran_date) WHERE deleted_id = 0;

The table sizes are -
my_table : 167 rows
table_1 : 21 rows
table_2 : 11 rows
table_3 : 3 rows
table_4 : 16 rows

Therefore for each tran_date in my_table there are potentially
21x11x3x16 = 11088 rows. Most will be null.

I want to select the row_id for the last tran_date for each of those
potential groups. This is my select -

SELECT (
SELECT a.row_id FROM my_table a
WHERE a.fld_1 = b.row_id
AND a.fld_2 = c.row_id
AND a.fld_3 = d.row_id
AND a.fld_4 = e.row_id
AND a.deleted_id = 0
ORDER BY a.tran_date DESC LIMIT 1
)
FROM table_1 b, table_2 c, table_3 d, table_4 e

Out of 11088 rows selected, 103 are not null.

On identical data, this takes 0.06 sec on SQL Server, 0.04 sec on
sqlite3, and 0.31 sec on PostgreSQL.

SQL Server does a good job at caching data in memory. PostgreSQL does too
on consecutive calls to the same table. What execution time do you get if
you issue the query a second time?

My first guess would be to add an index on my_table.tran_date and check in
EXPLAIN that you don't have a SEQUENTIAL SCAN on that table.

I have looked at the EXPLAIN, but I don't really know what to look for.
I can supply it if that would help.

Thanks for any advice.

Frank Millman

--
Olivier Gautherot

#3Frank Millman
frank@chagford.com
In reply to: Olivier Gautherot (#2)
Re: Slow SELECT

On 2020-05-26 9:32 AM, Olivier Gautherot wrote:

Hi Frank,

On Tue, May 26, 2020 at 9:23 AM Frank Millman <frank@chagford.com
<mailto:frank@chagford.com>> wrote:

Hi all

I have a SELECT that runs over 5 times slower on PostgreSQL compared
with Sql Server and sqlite3. I am trying to understand why.

I have a table that looks like this (simplified) -

CREATE TABLE my_table (
     row_id SERIAL PRIMARY KEY,
     deleted_id INT DEFAULT 0,
     fld_1 INT REFERENCES table_1(row_id),
     fld_2 INT REFERENCES table_2(row_id),
     fld_3 INT REFERENCES table_3(row_id),
     fld_4 INT REFERENCES table_4(row_id),
     tran_date DATE,
     tran_total DEC(21,2)
     );

CREATE UNIQUE INDEX my_table_ndx ON my_table (fld_1, fld_2, fld_3,
fld_4, tran_date) WHERE deleted_id = 0;

The table sizes are -
     my_table : 167 rows
     table_1 : 21 rows
     table_2 : 11 rows
     table_3 : 3 rows
     table_4 : 16 rows

Therefore for each tran_date in my_table there are potentially
21x11x3x16 = 11088 rows. Most will be null.

I want to select the row_id for the last tran_date for each of those
potential groups. This is my select -

     SELECT (
         SELECT a.row_id FROM my_table a
         WHERE a.fld_1 = b.row_id
         AND a.fld_2 = c.row_id
         AND a.fld_3 = d.row_id
         AND a.fld_4 = e.row_id
         AND a.deleted_id = 0
         ORDER BY a.tran_date DESC LIMIT 1
     )
     FROM table_1 b, table_2 c, table_3 d, table_4 e

Out of 11088 rows selected, 103 are not null.

On identical data, this takes 0.06 sec on SQL Server, 0.04 sec on
sqlite3, and 0.31 sec on PostgreSQL.

SQL Server does a good job at caching data in memory. PostgreSQL does
too on consecutive calls to the same table. What execution time do you
get if you issue the query a second time?

My first guess would be to add an index on my_table.tran_date and check
in EXPLAIN that you don't have a SEQUENTIAL SCAN on that table.

I have looked at the EXPLAIN, but I don't really know what to look for.
I can supply it if that would help.

Thanks for any advice.

Thanks Olivier. Unfortunately that did not help.

I was already running the query twice and only timing the second one.

I added the index on tran_date. The timing is the same, and EXPLAIN
shows that it is using a SEQUENTIAL SCAN.

Here is the EXPLAIN -

Nested Loop (cost=0.00..64155.70 rows=11088 width=4)
-> Nested Loop (cost=0.00..10.36 rows=528 width=12)
-> Nested Loop (cost=0.00..2.56 rows=33 width=8)
-> Seq Scan on table_2 c (cost=0.00..1.11 rows=11 width=4)
-> Materialize (cost=0.00..1.04 rows=3 width=4)
-> Seq Scan on table_3 d (cost=0.00..1.03 rows=3
width=4)
-> Materialize (cost=0.00..1.24 rows=16 width=4)
-> Seq Scan on table_4 e (cost=0.00..1.16 rows=16 width=4)
-> Materialize (cost=0.00..1.31 rows=21 width=4)
-> Seq Scan on table_1 b (cost=0.00..1.21 rows=21 width=4)
SubPlan 1
-> Limit (cost=5.77..5.77 rows=1 width=8)
-> Sort (cost=5.77..5.77 rows=1 width=8)
Sort Key: a.tran_date DESC
-> Seq Scan on my_table a (cost=0.00..5.76 rows=1
width=8)
Filter: ((fld_1 = b.row_id) AND (fld_2 =
c.row_id) AND (fld_3 = d.row_id) AND (fld_4 = e.row_id) AND (deleted_id
= 0))

Frank

#4Charles Clavadetscher
clavadetscher@swisspug.org
In reply to: Frank Millman (#3)
Re: Slow SELECT

Hello

On 2020-05-26 10:38, Frank Millman wrote:

On 2020-05-26 9:32 AM, Olivier Gautherot wrote:

Hi Frank,

On Tue, May 26, 2020 at 9:23 AM Frank Millman <frank@chagford.com
<mailto:frank@chagford.com>> wrote:

Hi all

I have a SELECT that runs over 5 times slower on PostgreSQL
compared
with Sql Server and sqlite3. I am trying to understand why.

I have a table that looks like this (simplified) -

CREATE TABLE my_table (
     row_id SERIAL PRIMARY KEY,
     deleted_id INT DEFAULT 0,
     fld_1 INT REFERENCES table_1(row_id),
     fld_2 INT REFERENCES table_2(row_id),
     fld_3 INT REFERENCES table_3(row_id),
     fld_4 INT REFERENCES table_4(row_id),
     tran_date DATE,
     tran_total DEC(21,2)
     );

CREATE UNIQUE INDEX my_table_ndx ON my_table (fld_1, fld_2, fld_3,
fld_4, tran_date) WHERE deleted_id = 0;

The table sizes are -
     my_table : 167 rows
     table_1 : 21 rows
     table_2 : 11 rows
     table_3 : 3 rows
     table_4 : 16 rows

Therefore for each tran_date in my_table there are potentially
21x11x3x16 = 11088 rows. Most will be null.

I want to select the row_id for the last tran_date for each of
those
potential groups. This is my select -

     SELECT (
         SELECT a.row_id FROM my_table a
         WHERE a.fld_1 = b.row_id
         AND a.fld_2 = c.row_id
         AND a.fld_3 = d.row_id
         AND a.fld_4 = e.row_id
         AND a.deleted_id = 0
         ORDER BY a.tran_date DESC LIMIT 1
     )
     FROM table_1 b, table_2 c, table_3 d, table_4 e

Out of 11088 rows selected, 103 are not null.

On identical data, this takes 0.06 sec on SQL Server, 0.04 sec on
sqlite3, and 0.31 sec on PostgreSQL.

SQL Server does a good job at caching data in memory. PostgreSQL does
too on consecutive calls to the same table. What execution time do you
get if you issue the query a second time?

My first guess would be to add an index on my_table.tran_date and
check in EXPLAIN that you don't have a SEQUENTIAL SCAN on that table.

I have looked at the EXPLAIN, but I don't really know what to look
for.
I can supply it if that would help.

Thanks for any advice.

Thanks Olivier. Unfortunately that did not help.

I was already running the query twice and only timing the second one.

I added the index on tran_date. The timing is the same, and EXPLAIN
shows that it is using a SEQUENTIAL SCAN.

Here is the EXPLAIN -

Nested Loop (cost=0.00..64155.70 rows=11088 width=4)
-> Nested Loop (cost=0.00..10.36 rows=528 width=12)
-> Nested Loop (cost=0.00..2.56 rows=33 width=8)
-> Seq Scan on table_2 c (cost=0.00..1.11 rows=11
width=4)
-> Materialize (cost=0.00..1.04 rows=3 width=4)
-> Seq Scan on table_3 d (cost=0.00..1.03 rows=3
width=4)
-> Materialize (cost=0.00..1.24 rows=16 width=4)
-> Seq Scan on table_4 e (cost=0.00..1.16 rows=16
width=4)
-> Materialize (cost=0.00..1.31 rows=21 width=4)
-> Seq Scan on table_1 b (cost=0.00..1.21 rows=21 width=4)
SubPlan 1
-> Limit (cost=5.77..5.77 rows=1 width=8)
-> Sort (cost=5.77..5.77 rows=1 width=8)
Sort Key: a.tran_date DESC
-> Seq Scan on my_table a (cost=0.00..5.76 rows=1
width=8)
Filter: ((fld_1 = b.row_id) AND (fld_2 =
c.row_id) AND (fld_3 = d.row_id) AND (fld_4 = e.row_id) AND
(deleted_id = 0))

Frank

If I see it correct, the query runs sequential scans on all tables, i.e.
table_1 to table_4.
Do you have an index on the referenced keys (row_id) in table_1 to
table_4?

It happens often that referenced keys are not indexed, leading to poor
execution plans.

Bye
Charles

#5Charles Clavadetscher
clavadetscher@swisspug.org
In reply to: Charles Clavadetscher (#4)
Re: Slow SELECT

On 2020-05-26 11:10, Charles Clavadetscher wrote:

Hello

On 2020-05-26 10:38, Frank Millman wrote:

On 2020-05-26 9:32 AM, Olivier Gautherot wrote:

Hi Frank,

On Tue, May 26, 2020 at 9:23 AM Frank Millman <frank@chagford.com
<mailto:frank@chagford.com>> wrote:

Hi all

I have a SELECT that runs over 5 times slower on PostgreSQL
compared
with Sql Server and sqlite3. I am trying to understand why.

I have a table that looks like this (simplified) -

CREATE TABLE my_table (
     row_id SERIAL PRIMARY KEY,
     deleted_id INT DEFAULT 0,
     fld_1 INT REFERENCES table_1(row_id),
     fld_2 INT REFERENCES table_2(row_id),
     fld_3 INT REFERENCES table_3(row_id),
     fld_4 INT REFERENCES table_4(row_id),
     tran_date DATE,
     tran_total DEC(21,2)
     );

CREATE UNIQUE INDEX my_table_ndx ON my_table (fld_1, fld_2,
fld_3,
fld_4, tran_date) WHERE deleted_id = 0;

The table sizes are -
     my_table : 167 rows
     table_1 : 21 rows
     table_2 : 11 rows
     table_3 : 3 rows
     table_4 : 16 rows

Therefore for each tran_date in my_table there are potentially
21x11x3x16 = 11088 rows. Most will be null.

I want to select the row_id for the last tran_date for each of
those
potential groups. This is my select -

     SELECT (
         SELECT a.row_id FROM my_table a
         WHERE a.fld_1 = b.row_id
         AND a.fld_2 = c.row_id
         AND a.fld_3 = d.row_id
         AND a.fld_4 = e.row_id
         AND a.deleted_id = 0
         ORDER BY a.tran_date DESC LIMIT 1
     )
     FROM table_1 b, table_2 c, table_3 d, table_4 e

Out of 11088 rows selected, 103 are not null.

On identical data, this takes 0.06 sec on SQL Server, 0.04 sec on
sqlite3, and 0.31 sec on PostgreSQL.

SQL Server does a good job at caching data in memory. PostgreSQL does
too on consecutive calls to the same table. What execution time do
you get if you issue the query a second time?

My first guess would be to add an index on my_table.tran_date and
check in EXPLAIN that you don't have a SEQUENTIAL SCAN on that table.

I have looked at the EXPLAIN, but I don't really know what to
look for.
I can supply it if that would help.

Thanks for any advice.

Thanks Olivier. Unfortunately that did not help.

I was already running the query twice and only timing the second one.

I added the index on tran_date. The timing is the same, and EXPLAIN
shows that it is using a SEQUENTIAL SCAN.

Here is the EXPLAIN -

Nested Loop (cost=0.00..64155.70 rows=11088 width=4)
-> Nested Loop (cost=0.00..10.36 rows=528 width=12)
-> Nested Loop (cost=0.00..2.56 rows=33 width=8)
-> Seq Scan on table_2 c (cost=0.00..1.11 rows=11
width=4)
-> Materialize (cost=0.00..1.04 rows=3 width=4)
-> Seq Scan on table_3 d (cost=0.00..1.03
rows=3 width=4)
-> Materialize (cost=0.00..1.24 rows=16 width=4)
-> Seq Scan on table_4 e (cost=0.00..1.16 rows=16
width=4)
-> Materialize (cost=0.00..1.31 rows=21 width=4)
-> Seq Scan on table_1 b (cost=0.00..1.21 rows=21 width=4)
SubPlan 1
-> Limit (cost=5.77..5.77 rows=1 width=8)
-> Sort (cost=5.77..5.77 rows=1 width=8)
Sort Key: a.tran_date DESC
-> Seq Scan on my_table a (cost=0.00..5.76 rows=1
width=8)
Filter: ((fld_1 = b.row_id) AND (fld_2 =
c.row_id) AND (fld_3 = d.row_id) AND (fld_4 = e.row_id) AND
(deleted_id = 0))

Frank

If I see it correct, the query runs sequential scans on all tables,
i.e. table_1 to table_4.
Do you have an index on the referenced keys (row_id) in table_1 to
table_4?

It happens often that referenced keys are not indexed, leading to poor
execution plans.

Bye
Charles

I noticed later that you have very small tables. This will probably lead
to a sequential scan althought there is an index in place.

I am not sure if it makes a difference, but what about using explicit
joins?

SELECT a.row_id FROM my_table a
JOIN b table_1 ON (b.row_id = a.fld_1)
JOIN c table_2 ON (c.row_id = a.fld_2)
JOIN d table_3 ON (d.row_id = a.fld_3)
JOIN e table_4 ON (e.row_id = a.fld_4)
WHERE a.deleted_id = 0
ORDER BY a.tran_date DESC LIMIT 1;

Regards
Charles

#6Frank Millman
frank@chagford.com
In reply to: Charles Clavadetscher (#4)
Re: Slow SELECT

On 2020-05-26 11:10 AM, Charles Clavadetscher wrote:

Hello

On 2020-05-26 10:38, Frank Millman wrote:

On 2020-05-26 9:32 AM, Olivier Gautherot wrote:

Hi Frank,

On Tue, May 26, 2020 at 9:23 AM Frank Millman <frank@chagford.com
<mailto:frank@chagford.com>> wrote:

    Hi all

    I have a SELECT that runs over 5 times slower on PostgreSQL compared
    with Sql Server and sqlite3. I am trying to understand why.

    I have a table that looks like this (simplified) -

    CREATE TABLE my_table (
          row_id SERIAL PRIMARY KEY,
          deleted_id INT DEFAULT 0,
          fld_1 INT REFERENCES table_1(row_id),
          fld_2 INT REFERENCES table_2(row_id),
          fld_3 INT REFERENCES table_3(row_id),
          fld_4 INT REFERENCES table_4(row_id),
          tran_date DATE,
          tran_total DEC(21,2)
          );

    CREATE UNIQUE INDEX my_table_ndx ON my_table (fld_1, fld_2, fld_3,
    fld_4, tran_date) WHERE deleted_id = 0;

    The table sizes are -
          my_table : 167 rows
          table_1 : 21 rows
          table_2 : 11 rows
          table_3 : 3 rows
          table_4 : 16 rows

    Therefore for each tran_date in my_table there are potentially
    21x11x3x16 = 11088 rows. Most will be null.

    I want to select the row_id for the last tran_date for each of those
    potential groups. This is my select -

          SELECT (
              SELECT a.row_id FROM my_table a
              WHERE a.fld_1 = b.row_id
              AND a.fld_2 = c.row_id
              AND a.fld_3 = d.row_id
              AND a.fld_4 = e.row_id
              AND a.deleted_id = 0
              ORDER BY a.tran_date DESC LIMIT 1
          )
          FROM table_1 b, table_2 c, table_3 d, table_4 e

    Out of 11088 rows selected, 103 are not null.

    On identical data, this takes 0.06 sec on SQL Server, 0.04 sec on
    sqlite3, and 0.31 sec on PostgreSQL.

SQL Server does a good job at caching data in memory. PostgreSQL does
too on consecutive calls to the same table. What execution time do
you get if you issue the query a second time?

My first guess would be to add an index on my_table.tran_date and
check in EXPLAIN that you don't have a SEQUENTIAL SCAN on that table.

    I have looked at the EXPLAIN, but I don't really know what to
look for.
    I can supply it if that would help.

    Thanks for any advice.

Thanks Olivier. Unfortunately that did not help.

I was already running the query twice and only timing the second one.

I added the index on tran_date. The timing is the same, and EXPLAIN
shows that it is using a SEQUENTIAL SCAN.

Here is the EXPLAIN -

 Nested Loop  (cost=0.00..64155.70 rows=11088 width=4)
   ->  Nested Loop  (cost=0.00..10.36 rows=528 width=12)
         ->  Nested Loop  (cost=0.00..2.56 rows=33 width=8)
               ->  Seq Scan on table_2 c  (cost=0.00..1.11 rows=11
width=4)
               ->  Materialize  (cost=0.00..1.04 rows=3 width=4)
                     ->  Seq Scan on table_3 d  (cost=0.00..1.03
rows=3 width=4)
         ->  Materialize  (cost=0.00..1.24 rows=16 width=4)
               ->  Seq Scan on table_4 e  (cost=0.00..1.16 rows=16
width=4)
   ->  Materialize  (cost=0.00..1.31 rows=21 width=4)
         ->  Seq Scan on table_1 b  (cost=0.00..1.21 rows=21 width=4)
   SubPlan 1
     ->  Limit  (cost=5.77..5.77 rows=1 width=8)
           ->  Sort  (cost=5.77..5.77 rows=1 width=8)
                 Sort Key: a.tran_date DESC
                 ->  Seq Scan on my_table a  (cost=0.00..5.76 rows=1
width=8)
                       Filter: ((fld_1 = b.row_id) AND (fld_2 =
c.row_id) AND (fld_3 = d.row_id) AND (fld_4 = e.row_id) AND
(deleted_id = 0))

Frank

If I see it correct, the query runs sequential scans on all tables, i.e.
table_1 to table_4.
Do you have an index on the referenced keys (row_id) in table_1 to table_4?

It happens often that referenced keys are not indexed, leading to poor
execution plans.

The referenced keys are all defined as SERIAL PRIMARY KEY in their own
tables, so I presume that that are all indexed automatically.

On the other hand, there are not many rows in those tables, so the
planner may decide not to use the index in that case.

Frank

#7Christian Ramseyer
rc@networkz.ch
In reply to: Frank Millman (#1)
Re: Slow SELECT

Hi

On 26.05.20 09:22, Frank Millman wrote:

I have looked at the EXPLAIN, but I don't really know what to look for.
I can supply it if that would help.

My favorite approach to tuning Postgres queries is:

1. Run EXPLAIN ANALYZE <query>
2. Copy/Paste the output into the fantastic https://explain.depesz.com/

This will turn the somewhat hard-to-understand explain output into a
nice colored structure. If it's not obvious from the orange-reddish
boxes where the slowness comes from, please post the link here and
somebody will certainly have some advice.

Cheers
Christian

--
Christian Ramseyer, netnea ag
Network Management. Security. OpenSource.
https://www.netnea.com

#8David Rowley
dgrowleyml@gmail.com
In reply to: Frank Millman (#1)
Re: Slow SELECT

On Tue, 26 May 2020 at 19:23, Frank Millman <frank@chagford.com> wrote:

The table sizes are -
my_table : 167 rows
table_1 : 21 rows
table_2 : 11 rows
table_3 : 3 rows
table_4 : 16 rows

Therefore for each tran_date in my_table there are potentially
21x11x3x16 = 11088 rows. Most will be null.

I want to select the row_id for the last tran_date for each of those
potential groups. This is my select -

SELECT (
SELECT a.row_id FROM my_table a
WHERE a.fld_1 = b.row_id
AND a.fld_2 = c.row_id
AND a.fld_3 = d.row_id
AND a.fld_4 = e.row_id
AND a.deleted_id = 0
ORDER BY a.tran_date DESC LIMIT 1
)
FROM table_1 b, table_2 c, table_3 d, table_4 e

Out of 11088 rows selected, 103 are not null.

Perhaps SQL Server is doing something to rewrite the subquery in the
target list to a LEFT JOIN. PostgreSQL currently does not do that.

Since "my_table" is small, you'd likely be much better doing a manual
rewrite of the query to join a subquery containing the required
details from "my_table". It looks like you want the row_id from the
latest tran_date for each fld_N column. So something like:

SELECT a.row_id
FROM table_1 b
CROSS JOIN table_2 c
CROSS JOIN table_3 d
CROSS JOIN table_4 e
LEFT OUTER JOIN (
SELECT fld_1,fld_2,fld_3,fld_4,row_id,tran_date,
ROW_NUMBER() OVER (PARTITION BY fld_1,fld_2,fld_3,fld_4 ORDER BY
tran_date DESC) row_num
FROM my_table
WHERE deleted_id = 0
) a ON a.fld_1 = b.row_id AND a.fld_2 = c.row_id AND a.fld_3 =
d.row_id AND a.fld_4 = e.row_id AND a.row_num = 1;

Should do it. You could also perhaps do something with DISTINCT ON
instead of using ROW_NUMBER(). That might be a bit more efficient, but
it's unlikely to matter too much since there are only 167 rows in that
table.

David

#9Frank Millman
frank@chagford.com
In reply to: Charles Clavadetscher (#5)
Re: Slow SELECT

On 2020-05-26 11:27 AM, Charles Clavadetscher wrote:

On 2020-05-26 11:10, Charles Clavadetscher wrote:

Hello

On 2020-05-26 10:38, Frank Millman wrote:

On 2020-05-26 9:32 AM, Olivier Gautherot wrote:

Hi Frank,

On Tue, May 26, 2020 at 9:23 AM Frank Millman <frank@chagford.com
<mailto:frank@chagford.com>> wrote:

    Hi all

    I have a SELECT that runs over 5 times slower on PostgreSQL
compared
    with Sql Server and sqlite3. I am trying to understand why.

    I have a table that looks like this (simplified) -

    CREATE TABLE my_table (
          row_id SERIAL PRIMARY KEY,
          deleted_id INT DEFAULT 0,
          fld_1 INT REFERENCES table_1(row_id),
          fld_2 INT REFERENCES table_2(row_id),
          fld_3 INT REFERENCES table_3(row_id),
          fld_4 INT REFERENCES table_4(row_id),
          tran_date DATE,
          tran_total DEC(21,2)
          );

    CREATE UNIQUE INDEX my_table_ndx ON my_table (fld_1, fld_2, fld_3,
    fld_4, tran_date) WHERE deleted_id = 0;

    The table sizes are -
          my_table : 167 rows
          table_1 : 21 rows
          table_2 : 11 rows
          table_3 : 3 rows
          table_4 : 16 rows

    Therefore for each tran_date in my_table there are potentially
    21x11x3x16 = 11088 rows. Most will be null.

    I want to select the row_id for the last tran_date for each of
those
    potential groups. This is my select -

          SELECT (
              SELECT a.row_id FROM my_table a
              WHERE a.fld_1 = b.row_id
              AND a.fld_2 = c.row_id
              AND a.fld_3 = d.row_id
              AND a.fld_4 = e.row_id
              AND a.deleted_id = 0
              ORDER BY a.tran_date DESC LIMIT 1
          )
          FROM table_1 b, table_2 c, table_3 d, table_4 e

    Out of 11088 rows selected, 103 are not null.

    On identical data, this takes 0.06 sec on SQL Server, 0.04 sec on
    sqlite3, and 0.31 sec on PostgreSQL.

SQL Server does a good job at caching data in memory. PostgreSQL
does too on consecutive calls to the same table. What execution time
do you get if you issue the query a second time?

My first guess would be to add an index on my_table.tran_date and
check in EXPLAIN that you don't have a SEQUENTIAL SCAN on that table.

    I have looked at the EXPLAIN, but I don't really know what to
look for.
    I can supply it if that would help.

    Thanks for any advice.

Thanks Olivier. Unfortunately that did not help.

I was already running the query twice and only timing the second one.

I added the index on tran_date. The timing is the same, and EXPLAIN
shows that it is using a SEQUENTIAL SCAN.

Here is the EXPLAIN -

 Nested Loop  (cost=0.00..64155.70 rows=11088 width=4)
   ->  Nested Loop  (cost=0.00..10.36 rows=528 width=12)
         ->  Nested Loop  (cost=0.00..2.56 rows=33 width=8)
               ->  Seq Scan on table_2 c  (cost=0.00..1.11 rows=11
width=4)
               ->  Materialize  (cost=0.00..1.04 rows=3 width=4)
                     ->  Seq Scan on table_3 d  (cost=0.00..1.03
rows=3 width=4)
         ->  Materialize  (cost=0.00..1.24 rows=16 width=4)
               ->  Seq Scan on table_4 e  (cost=0.00..1.16 rows=16
width=4)
   ->  Materialize  (cost=0.00..1.31 rows=21 width=4)
         ->  Seq Scan on table_1 b  (cost=0.00..1.21 rows=21 width=4)
   SubPlan 1
     ->  Limit  (cost=5.77..5.77 rows=1 width=8)
           ->  Sort  (cost=5.77..5.77 rows=1 width=8)
                 Sort Key: a.tran_date DESC
                 ->  Seq Scan on my_table a  (cost=0.00..5.76 rows=1
width=8)
                       Filter: ((fld_1 = b.row_id) AND (fld_2 =
c.row_id) AND (fld_3 = d.row_id) AND (fld_4 = e.row_id) AND
(deleted_id = 0))

Frank

If I see it correct, the query runs sequential scans on all tables,
i.e. table_1 to table_4.
Do you have an index on the referenced keys (row_id) in table_1 to
table_4?

It happens often that referenced keys are not indexed, leading to poor
execution plans.

Bye
Charles

I noticed later that you have very small tables. This will probably lead
to a sequential scan althought there is an index in place.

I am not sure if it makes a difference, but what about using explicit
joins?

SELECT a.row_id FROM my_table a
JOIN b table_1 ON (b.row_id = a.fld_1)
JOIN c table_2 ON (c.row_id = a.fld_2)
JOIN d table_3 ON (d.row_id = a.fld_3)
JOIN e table_4 ON (e.row_id = a.fld_4)
WHERE a.deleted_id = 0
ORDER BY a.tran_date DESC LIMIT 1;

Thanks, Charles. I tried that, but unfortunately it produces a different
result. I need to test for every possible combination of fld1-4, and get
the highest date for each one. Using joins only tests existing
combinations, and gets the highest date for all of them combined.

Seel my reply to David Rowley. I do not fully understand his solution
yet, but it seems to be what I am looking for.

Thanks again

Frank

#10Frank Millman
frank@chagford.com
In reply to: Christian Ramseyer (#7)
Re: Slow SELECT

On 2020-05-26 12:02 PM, Christian Ramseyer wrote:

Hi

On 26.05.20 09:22, Frank Millman wrote:

I have looked at the EXPLAIN, but I don't really know what to look for.
I can supply it if that would help.

My favorite approach to tuning Postgres queries is:

1. Run EXPLAIN ANALYZE <query>
2. Copy/Paste the output into the fantastic https://explain.depesz.com/

This will turn the somewhat hard-to-understand explain output into a
nice colored structure. If it's not obvious from the orange-reddish
boxes where the slowness comes from, please post the link here and
somebody will certainly have some advice.

Thanks, Christian. I will definitely look into that.

Frank

#11Frank Millman
frank@chagford.com
In reply to: David Rowley (#8)
Re: Slow SELECT

On 2020-05-26 12:04 PM, David Rowley wrote:

On Tue, 26 May 2020 at 19:23, Frank Millman <frank@chagford.com> wrote:

The table sizes are -
my_table : 167 rows
table_1 : 21 rows
table_2 : 11 rows
table_3 : 3 rows
table_4 : 16 rows

Therefore for each tran_date in my_table there are potentially
21x11x3x16 = 11088 rows. Most will be null.

I want to select the row_id for the last tran_date for each of those
potential groups. This is my select -

SELECT (
SELECT a.row_id FROM my_table a
WHERE a.fld_1 = b.row_id
AND a.fld_2 = c.row_id
AND a.fld_3 = d.row_id
AND a.fld_4 = e.row_id
AND a.deleted_id = 0
ORDER BY a.tran_date DESC LIMIT 1
)
FROM table_1 b, table_2 c, table_3 d, table_4 e

Out of 11088 rows selected, 103 are not null.

Perhaps SQL Server is doing something to rewrite the subquery in the
target list to a LEFT JOIN. PostgreSQL currently does not do that.

Since "my_table" is small, you'd likely be much better doing a manual
rewrite of the query to join a subquery containing the required
details from "my_table". It looks like you want the row_id from the
latest tran_date for each fld_N column. So something like:

SELECT a.row_id
FROM table_1 b
CROSS JOIN table_2 c
CROSS JOIN table_3 d
CROSS JOIN table_4 e
LEFT OUTER JOIN (
SELECT fld_1,fld_2,fld_3,fld_4,row_id,tran_date,
ROW_NUMBER() OVER (PARTITION BY fld_1,fld_2,fld_3,fld_4 ORDER BY
tran_date DESC) row_num
FROM my_table
WHERE deleted_id = 0
) a ON a.fld_1 = b.row_id AND a.fld_2 = c.row_id AND a.fld_3 =
d.row_id AND a.fld_4 = e.row_id AND a.row_num = 1;

Should do it. You could also perhaps do something with DISTINCT ON
instead of using ROW_NUMBER(). That might be a bit more efficient, but
it's unlikely to matter too much since there are only 167 rows in that
table.

Thank you David. I tried that and it produced the correct result in
53ms, which is what I am looking for.

It will take me some time to understand it fully, so I have some
homework to do!

Much appreciated.

Frank

#12Vik Fearing
vik@postgresfriends.org
In reply to: David Rowley (#8)
Re: Slow SELECT

On 5/26/20 12:04 PM, David Rowley wrote:

Since "my_table" is small, you'd likely be much better doing a manual
rewrite of the query to join a subquery containing the required
details from "my_table". It looks like you want the row_id from the
latest tran_date for each fld_N column. So something like:

SELECT a.row_id
FROM table_1 b
CROSS JOIN table_2 c
CROSS JOIN table_3 d
CROSS JOIN table_4 e
LEFT OUTER JOIN (
SELECT fld_1,fld_2,fld_3,fld_4,row_id,tran_date,
ROW_NUMBER() OVER (PARTITION BY fld_1,fld_2,fld_3,fld_4 ORDER BY
tran_date DESC) row_num
FROM my_table
WHERE deleted_id = 0
) a ON a.fld_1 = b.row_id AND a.fld_2 = c.row_id AND a.fld_3 =
d.row_id AND a.fld_4 = e.row_id AND a.row_num = 1;

Should do it. You could also perhaps do something with DISTINCT ON
instead of using ROW_NUMBER(). That might be a bit more efficient, but
it's unlikely to matter too much since there are only 167 rows in that
table.

I would expect a lateral query to be better here.

SELECT a.*
FROM table_1 AS b
CROSS JOIN table_2 AS c
CROSS JOIN table_3 AS d
CROSS JOIN table_4 AS e
CROSS JOIN LATERAL (
SELECT *
FROM my_table AS a
WHERE (a.fld_1, a.fld_2, a.fld_3, a.fld_4) = (b.row_id, c.row_id,
d.row_id, e.row_id)
AND a.deleted = 0
ORDER BY a.tran_date DESC
FETCH FIRST ROW ONLY
) AS a
WHERE a.row_id IS NOT NULL;

You will likely want an index on my_table (fld_1, fld_2, fld_3, fld_4,
tran_date) if your dataset gets bigger.

This query is 100% Standard SQL, so it *should* work on other engines.
That doesn't mean it will, though.
--
Vik Fearing

#13David Rowley
dgrowleyml@gmail.com
In reply to: Frank Millman (#11)
Re: Slow SELECT

On Tue, 26 May 2020 at 22:31, Frank Millman <frank@chagford.com> wrote:

Thank you David. I tried that and it produced the correct result in
53ms, which is what I am looking for.

It will take me some time to understand it fully, so I have some
homework to do!

The main problem with your previous query was that the subquery was
being executed 11088 times and could only ever find anything 167
times. The remaining number of times nothing would be found.

I just changed the subquery which would be executed once per output
row and altered it so it became a subquery that's joined and only
executed once. The ROW_NUMBER() is a windowing function, which is
explained in [1]https://www.postgresql.org/docs/current/tutorial-window.html. I used this to get the row_id of the record with
the lowest tran_date, just like you were doing with the ORDER BY
tran_date DESC LIMIT 1, but the subquery with the windowing function
gets them all at once, rather than doing it in a way that requires it
to be executed once for each row in the top-level query. In this case,
the functionality that the LIMIT 1 does in your query is achieved with
"AND a.row_num = 1;" in my version. This is pretty fast to execute
once due to there only being 167 rows.

It's also important to know that there may be cases where the method I
proposed is slower. For example, if my_table was very large and
contained rows that were not in table_1 to table_4. Since the subquery
in my version calculates everything then it could be wasteful to do
that for values that would never be used. For you, you have foreign
keys that ensure my_table does not contain records that are not in the
other tables, but you could still see this issue if you were to add
some restrictive WHERE clause to the outer query. Perhaps this won't
be a problem for you, but it's likely good to know.

[1]: https://www.postgresql.org/docs/current/tutorial-window.html

David

#14David Rowley
dgrowleyml@gmail.com
In reply to: Vik Fearing (#12)
Re: Slow SELECT

On Tue, 26 May 2020 at 23:41, Vik Fearing <vik@postgresfriends.org> wrote:

On 5/26/20 12:04 PM, David Rowley wrote:

Since "my_table" is small, you'd likely be much better doing a manual
rewrite of the query to join a subquery containing the required
details from "my_table". It looks like you want the row_id from the
latest tran_date for each fld_N column. So something like:

SELECT a.row_id
FROM table_1 b
CROSS JOIN table_2 c
CROSS JOIN table_3 d
CROSS JOIN table_4 e
LEFT OUTER JOIN (
SELECT fld_1,fld_2,fld_3,fld_4,row_id,tran_date,
ROW_NUMBER() OVER (PARTITION BY fld_1,fld_2,fld_3,fld_4 ORDER BY
tran_date DESC) row_num
FROM my_table
WHERE deleted_id = 0
) a ON a.fld_1 = b.row_id AND a.fld_2 = c.row_id AND a.fld_3 =
d.row_id AND a.fld_4 = e.row_id AND a.row_num = 1;

Should do it. You could also perhaps do something with DISTINCT ON
instead of using ROW_NUMBER(). That might be a bit more efficient, but
it's unlikely to matter too much since there are only 167 rows in that
table.

I would expect a lateral query to be better here.

But that would put it back to executing the subquery 11088 times. I
wrote it in a way to avoid that.

David

#15Frank Millman
frank@chagford.com
In reply to: David Rowley (#13)
Re: Slow SELECT

On 2020-05-26 1:45 PM, David Rowley wrote:

On Tue, 26 May 2020 at 22:31, Frank Millman <frank@chagford.com> wrote:

Thank you David. I tried that and it produced the correct result in
53ms, which is what I am looking for.

It will take me some time to understand it fully, so I have some
homework to do!

The main problem with your previous query was that the subquery was
being executed 11088 times and could only ever find anything 167
times. The remaining number of times nothing would be found.

I just changed the subquery which would be executed once per output
row and altered it so it became a subquery that's joined and only
executed once. The ROW_NUMBER() is a windowing function, which is
explained in [1]. I used this to get the row_id of the record with
the lowest tran_date, just like you were doing with the ORDER BY
tran_date DESC LIMIT 1, but the subquery with the windowing function
gets them all at once, rather than doing it in a way that requires it
to be executed once for each row in the top-level query. In this case,
the functionality that the LIMIT 1 does in your query is achieved with
"AND a.row_num = 1;" in my version. This is pretty fast to execute
once due to there only being 167 rows.

It's also important to know that there may be cases where the method I
proposed is slower. For example, if my_table was very large and
contained rows that were not in table_1 to table_4. Since the subquery
in my version calculates everything then it could be wasteful to do
that for values that would never be used. For you, you have foreign
keys that ensure my_table does not contain records that are not in the
other tables, but you could still see this issue if you were to add
some restrictive WHERE clause to the outer query. Perhaps this won't
be a problem for you, but it's likely good to know.

[1] https://www.postgresql.org/docs/current/tutorial-window.html

Thanks very much for the explanation. I will go through it carefully.

For the record, your query works without modification in both Sql Server
and sqlite3. It is also much faster in all three cases - all around
0.005 sec instead of 0.05 sec.

Frank

#16Frank Millman
frank@chagford.com
In reply to: David Rowley (#8)
Re: Slow SELECT

On 2020-05-26 12:04 PM, David Rowley wrote:

Since "my_table" is small, you'd likely be much better doing a manual
rewrite of the query to join a subquery containing the required
details from "my_table". It looks like you want the row_id from the
latest tran_date for each fld_N column. So something like:

SELECT a.row_id
FROM table_1 b
CROSS JOIN table_2 c
CROSS JOIN table_3 d
CROSS JOIN table_4 e
LEFT OUTER JOIN (
SELECT fld_1,fld_2,fld_3,fld_4,row_id,tran_date,
ROW_NUMBER() OVER (PARTITION BY fld_1,fld_2,fld_3,fld_4 ORDER BY
tran_date DESC) row_num
FROM my_table
WHERE deleted_id = 0
) a ON a.fld_1 = b.row_id AND a.fld_2 = c.row_id AND a.fld_3 =
d.row_id AND a.fld_4 = e.row_id AND a.row_num = 1;

Should do it. You could also perhaps do something with DISTINCT ON
instead of using ROW_NUMBER(). That might be a bit more efficient, but
it's unlikely to matter too much since there are only 167 rows in that
table.

I have studied the above SELECT, and I now more or less understand it. I
would not have come up with that unaided, so many thanks.

I tried DISTINCT ON, and it was very efficient, but unfortunately that
is not supported by SQL Server or sqlite3.

Then I came up with this alternative, which works on all three platforms
and seems a bit faster than the above -

SELECT a.row_id FROM (
SELECT row_id,
ROW_NUMBER() OVER (PARTITION BY fld_1, fld_2, fld_3, fld_4
ORDER BY tran_date DESC) row_num
FROM my_table
WHERE deleted_id = 0
) as a
WHERE a.row_num = 1

Do you see any problem with this?

Thanks

Frank