BUG #15847: Running out of memory when planning full outer joins involving many partitions
The following bug has been logged on the website:
Bug reference: 15847
Logged by: Feike Steenbergen
Email address: feikesteenbergen@gmail.com
PostgreSQL version: 11.3
Operating system: Ubuntu 18.04.2 LTS
Description:
Hi all,
We've had a few reports recently that had a backend consume a lot of
memory
causing either an OOM-kill or kubernetes rescheduling their PostgreSQL
pod.
The actual report and some graphs and details can be found here:
https://github.com/timescale/timescaledb/issues/1274
Note: The behavior is not TimescaleDB specific, it also happens on a
vanilla
PostgreSQL installation without Timescale installed.
For this specific bug report there were two things that clearly stood out:
- a FULL OUTER JOIN is done
- many partitions (thousands) are involved
The problematic behavior is as follows:
While planning a query, the backend uses a full CPU and it's memory keeps
increasing until either:
- ERROR: 53200: out of memory for systems with overcommit disabled
- or killed by OOM
- or rescheduled (kubernetes)
The backend seems to be in add_child_rel_equivalences during this time and
does
not respond to SIGINT while it is in there.
I've encountered this problem on 11.3, 10.8 and 9.6.13 (with table
inheritance
instead of declarative partitioning).
regards,
Feike Steenbergen
/*
The below SQL should reproduce the issue on a machine with <= 16GB memory:
This is a surrogate test case to trigger the problematic behavior.
The actual report of the user involved multiple tables, but to simplify
things here I'm just reusing the same partitioned table with a lot of
partitions
*/
CREATE TABLE buggy(
inserted timestamptz not null
)
PARTITION BY RANGE (inserted);
-- Create some partitions
DO $BODY$
DECLARE
partname text;
start date := date_trunc('week', '1999-12-31'::date);
BEGIN
FOR i IN 0..1000 LOOP
partname := format('buggy_%s', to_char(start, 'IYYYIW'));
EXECUTE format( $$CREATE TABLE %I PARTITION OF %I
FOR VALUES FROM (%L) TO (%L)$$,
partname,
'buggy',
start,
start + 7
);
start := start + 7;
END LOOP;
END;
$BODY$;
-- This works fine
EXPLAIN
SELECT
inserted
FROM
buggy b1
LEFT JOIN
buggy b2 USING (inserted)
LEFT JOIN
buggy b3 USING (inserted)
LEFT JOIN
buggy b4 USING (inserted
);
/*
This will either do the following:
- `ERROR: 53200: out of memory` for systems with overcommit disabled, or
- an out-of-memory kill (kernel)
- rescheduling of the pod (k8s)
*/
EXPLAIN
SELECT
inserted
FROM
buggy b1
FULL OUTER JOIN
buggy b2 USING (inserted)
FULL OUTER JOIN
buggy b3 USING (inserted)
FULL OUTER JOIN
buggy b4 USING (inserted)
;
PG Bug reporting form <noreply@postgresql.org> writes:
We've had a few reports recently that had a backend consume a lot of
memory causing either an OOM-kill or kubernetes rescheduling their
PostgreSQL pod.
For this specific bug report there were two things that clearly stood out:
- a FULL OUTER JOIN is done
- many partitions (thousands) are involved
I poked into this and found the cause. For the sample query, we have
an EquivalenceClass containing the expression
COALESCE(COALESCE(Var_1_1, Var_2_1), Var_3_1)
where each of the Vars belongs to an appendrel parent.
add_child_rel_equivalences() needs to add expressions representing the
transform of that to each child relation. That is, if the children
of table 1 are A1 and A2, of table 2 are B1 and B2, and of table 3
are C1 and C2, what we'd like to add are the expressions
COALESCE(COALESCE(Var_A1_1, Var_2_1), Var_3_1)
COALESCE(COALESCE(Var_A2_1, Var_2_1), Var_3_1)
COALESCE(COALESCE(Var_1_1, Var_B1_1), Var_3_1)
COALESCE(COALESCE(Var_1_1, Var_B2_1), Var_3_1)
COALESCE(COALESCE(Var_1_1, Var_2_1), Var_C1_1)
COALESCE(COALESCE(Var_1_1, Var_2_1), Var_C2_1)
However, what it's actually producing is additional combinations for
each appendrel after the first, because each call also mutates the
previously-added child expressions. So in this example we also get
COALESCE(COALESCE(Var_A1_1, Var_B1_1), Var_3_1)
COALESCE(COALESCE(Var_A2_1, Var_B2_1), Var_3_1)
COALESCE(COALESCE(Var_A1_1, Var_2_1), Var_C1_1)
COALESCE(COALESCE(Var_A2_1, Var_2_1), Var_C2_1)
COALESCE(COALESCE(Var_A1_1, Var_B1_1), Var_C1_1)
COALESCE(COALESCE(Var_A2_1, Var_B2_1), Var_C2_1)
With two appendrels involved, that's O(N^2) expressions; with
three appendrels, more like O(N^3).
This is by no means specific to FULL JOINs; you could get the same
behavior with join clauses like "WHERE t1.a + t2.b + t3.c = t4.d".
These extra expressions don't have any use, since we're not
going to join the children directly to each other. So we need
to fix add_child_rel_equivalences() to not do that. The
simplest way seems to be to make it ignore em_is_child EC members,
which requires that we use the adjust_appendrel_attrs_multilevel
machinery if we're trying to convert one of the original expressions
for a grandchild relation. As attached. This patch fixes the
described performance problem and still passes check-world.
While I don't have any hesitation about pushing this patch into HEAD,
I do feel a bit nervous about back-patching it, particularly right
before a set of minor releases. I don't think that we consider large
numbers of partitions to be a well-supported case in v11 or before,
so for the released branches I'd rather just say "if it hurts, don't
do that".
As an aside, adjust_appendrel_attrs_multilevel() makes me positively ill
(and it's not the head cold I have today...). It's unbelievably
brute-force, which might be okay if it were something we'd execute only
once per query, but examples like this can require it to be executed
thousands of times. Still, right now is probably not a good time to blow
it up and rewrite it.
regards, tom lane
Attachments:
avoid-extra-derived-expressions-in-eclasses.patchtext/x-diff; charset=us-ascii; name=avoid-extra-derived-expressions-in-eclasses.patchDownload+36-13
On Thu, 13 Jun 2019 at 19:14, Tom Lane <tgl@sss.pgh.pa.us> wrote:
This patch fixes the
described performance problem and still passes check-world.
Thanks! I can see drastic improvements in a 3-way join
and the 4-way join is now actually working.
Feike